PAPERS

  1. Tuan-Dung Le, Phuong D. Nguyen, Dmitry Korkin, Thanh Thieu (2022). PHILM2Web: A high-throughput database of macromolecular host–pathogen interactions on the Web. Database, 2022. https://doi.org/10.1093/database/baac042.
  2. Thanh Thieu, Jonathan Camacho Maldonado, Pei-Shu Ho, Min Ding, Alex Marr, Diane Brandt, Denis Newman-Griffis, Ayah Zirikly, Leighton Chan, Elizabeth Rasch (2021). A comprehensive study of mobility functioning information in clinical notes: Entity hierarchy, corpus annotation, and sequence labeling. International Journal of Medical Informatics, Volume 147, 104351, ISSN 1386-5056, https://doi.org/10.1016/j.ijmedinf.2020.104351.
  3. Denis Newman-Griffis, Julia Porcino, Ayah Zirikly, Thanh Thieu, Jonathan C. Maldonado, Pei-Shu Ho, Min Ding, Leighton Chan, Elizabeth Rasch, (2019): Broadening horizons: the case for capturing function and the role of health informatics in its use. BMC Public Health 19(1): 1288.
  4. Wenxian Zhou, Ao Yuan, Thanh Thieu, Hong-Bin Fang, Ming T. Tan (2017). Phase II basket group sequential clinical trial with binary responses. Austin Biometrics and Biostatistics, 4(1), id1033.
  5. Thanh Thieu, Sneha Joshi, Samantha Warren, Dmitry Korkin (2012). Literature mining of host–pathogen interactions: comparing feature-based supervised learning and language-based approaches. Bioinformatics, 28(6), 867-875.
  6. Tuan-Dung Le,Phuong D.Nguyen,Dmitry Korkin, Thanh Thieu (2021). A high-throughput, online tool for investigating host-pathogen macromolecular interactions buried in scientific literature. IEEE/ACM Conference on Connected Health Applications, Systems, and Engineering Technologies, December 2021, Washington D.C.
  7. Suhao Chen, Tuan-Dung Le, Thanh Thieu, Zhuqi Miao, Phuong D. Nguyen, and Andrew Gin (2021). Computer-assisted medical billing information extraction: comparing rule-based and end-to-end transfer learning approaches. IEEE/ACM Conference on Connected Health Applications, Systems, and Engineering Technologies, December 2021, Washington D.C.
  8. Thanh Thieu, Ha Do, Thanh Duong, Shi Pu, Sathyanarayanan Aakur, and Saad Khan (2021). LexDivPara: A Measure of Paraphrase Quality with Integrated Sentential Lexical Complexity. Intelligent Systems Conference (IntelliSys) 2021, 2-3 September 2021, Amsterdam, The Netherlands.
  9. Thanh Thieu, Jonathan C. Maldonado, Pei-Shu Ho, Julia Porcino, Min Ding, Lisa Nelson, Elizabeth Rasch, Chunxiao Zhou, Leighton Chan, Diane Brandt, Denis Newman-Griffis, Ao Yuan, Albert M. Lai (2017). Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain. IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Kansas City, MO, 2319-2321.
  10. Denis Newman-Griffis, Thanh Thieu, Chunxiao Zhou, Diane Brandt, Jonathan C. Maldonado, Julia Porcino, Albert M. Lai, Leighton Chan (2017). Characterizing the Language of Functioning: A Corpus Analysis Illustrating How Human Function is Described in Clinical Text. AMIA Joint Summits on Translational Science, San Francisco, CA.

BOOKS & THESIS

  1. Dmitry Korkin, Thanh Thieu, Sneha Joshi, Samantha Warren (2011). Mining Host-Pathogen Interactions. Systems and Computational Biology - Molecular and Cellular Experimental Systems, 10.5772/22016. (Book Chapter)
  2. Thanh Thieu, Dmitry Korkin (2015). Graphical Evolving Transformation System Machine. University of Missouri - Columbia, USA. (Ph.D. Dissertation)
  3. Thanh Thieu, Dmitry Korkin (2011). Mining Host-Pathogen Interaction from Biomedical Literature. University of Missouri - Columbia, USA. (M.S. Thesis)

CONFERENCE ABSTRACT/TALK

  1. Ahmadreza Homayouni, Thanh Thieu, Tieming Liu (2021). A novel feature selection method for non-image based diabetic retinopathy prediction. Harold Hamm Diabetes Center Research Symposium, November 2021, Virtual Online.
  2. Suhao Chen, Thanh Thieu, Zhuqi Miao, and Tieming Liu (2021). Developing a Computer-Assisted Medical Billing Coding System. 29thInternational Joint Conference on Artificial Intelligence (IJCAI), CA, USA. Honorable Mention.
  3. Krishna Patel, Tuan-Dung Le, Thanh Duong, and Thanh Thieu (2021). Using Natural Language Processing to Identify COVID-19 Spread Factors From the Literature to Assist With Mitigation of Future Outbreaks. 2021 OSU Undergraduate Summer Research Expo, July 28, 2021, Stillwater, OK, USA.
  4. Thanh Thieu (2021). A pilot study of mobility functioning information in clinical notes. NSF SCH Smart Health in the AI and COVID Era, Live Online.
  5. Thanh Duong, Robert Owens, Thanh Thieu (2020). An Automated Quality Measure of Sentential Paraphrases. The 109th Annual Technical Meeting of the Oklahoma Academy of Science.
  6. Suhao Chen, Thanh Thieu, Zhuqi Miao, Tieming Liu (2020). Text Mining Of Clinical Notes For Medical Billing. Institute for Operations Research and Management Science (INFORMS) Conference. Online Virtual.
  7. Thanh Thieu (2020). Tackling the COVID-19 pandemic using Deep Natural Language Processing. Website of Computing Research Association Virtual Conference. July 22 – 23, 2020.
  8. Thanh Thieu, Jonathan C. Maldonado, Pei-Shu Ho (2020). A comprehensive study of mobility related function in clinical notes. Coalition for Advancing Digital Research & Education (CADRE) Conference. Tulsa, OK. https://shareok.org/handle/11244/324833
  9. Suhao Chen, Thanh Thieu, Zhuqi Miao (2020). Software Comparison for Clinical Named Entity Recognition (NER) : A Phase-1 Study for Developing A Computer Assisted Medical Claims Billing and Coding System. in Coalition for Advancing Digital Research & Education (CADRE) Conference. Tulsa, OK: Oklahoma State University Libraries. (1st Place Award)
  10. Thanh Thieu (2020). Identify mobility functioning information from electronic health records. Computer Science Colloquium, Oklahoma State University. Stillwater, OK.
  11. Ayah Zirikly, Min Ding, Denis Newman-Griffis, Julia Porcino, Thanh Thieu (2018). Mobility Dictionaries: A Step towards a Standardized Ontology for Functioning Information. Mobilizing Computable Biomedical Knowledge. Bethesda, MD.
  12. Thanh Thieu, Dmitry Korkin (2013). A language-based approach to mining host-pathogen interactions from biomedical literature. MidSouth Computational Biology and Bioinformatics Society Conference. Oklahoma City, OK.
  13. Thanh Thieu, Samantha Warren, Dmitry Korkin (2010). Mining Host-Pathogen Interactions from Biomedical Literature. International Conference on Intelligent Systems for Molecular Biology. Boston, MA.